PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04539.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 268aa    MW: 30029.7 Da    PI: 7.1197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04539.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.6e-073886153
                                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                                    +++ ++erE+r Rd+ N+ f+eL ++l ++     + + Ka iL  +++ +k+
  Zmw_sc04539.1.g00040.1.am.mkhc 38 KKVHKSEREKRKRDKQNDLFDELGKMLEPD----RQNNGKACILSDTTRIVKD 86
                                    678899*********************997....4667777788777777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.3E-1035106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1235106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6933787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-53887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.94E-44087No hitNo description
SMARTSM003530.00174393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVPRDKAHDG ADAAHPAPPE TLVQGPILNK KCEKKVPKKV HKSEREKRKR DKQNDLFDEL  60
GKMLEPDRQN NGKACILSDT TRIVKDLFSQ VESLRKENSA LKNESHYVAL ERNELFDENN  120
LIRNDILGLK NELRMRLEGS PIWTHGTARS NLLLPHPGTQ VFALQHSPHT PVIATMALPQ  180
QQSAVLDPSY AAPRRELQLF PETTATEDNE RRPQDQGISN HVTRPQARYP TTTVTLPGHV  240
YPVLPRMEDE HCSNGTTGSG EEDGPGNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463230.11e-140hypothetical protein SORBIDRAFT_02g040140
TrEMBLC5X3661e-140C5X366_SORBI; Putative uncharacterized protein Sb02g040140
STRINGSb02g040140.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884